3. API Reference

kda.core	KDA Core Objects The core module contains code to build the core KineticModel object which contains all system information for a kinetic model.
kda.calculations	State Probability & Flux Calculations The calculations module contains code to calculate steady-state probabilities and fluxes from a user-defined kinetic diagram.
kda.diagrams	Diagram Generation The diagrams module contains code to generate partial diagrams (undirected spanning trees), directional diagrams, and flux diagrams using the diagram method developed by King and Altman and Hill .
kda.expressions	Algebraic Expressions The expressions module contains code to convert KDA-generated string expressions into SymPy symbolic expressions.
kda.plotting	Diagram Plotting The plotting module contains code to plot partial diagrams (undirected spanning trees), directional diagrams, and flux diagrams, as well as cycles and ode_solver() results.
kda.ode	Differential Equation Solvers This file contains a host of functions aimed at the analysis of biochemical kinetic diagrams via differential equations.
kda.svd	SVD and Matrix Solvers The svd module contains code to calculate steady-state probabilities using matrix and singular value decomposition methods.
kda.graph_utils	Graph Utilities This file contains a host of utility functions for NetworkX graphs.